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matlab ode15s solver  (MathWorks Inc)


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    MathWorks Inc matlab ode15s solver
    Matlab Ode15s Solver, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ode15s+solver+matlab/pm40186552-148-5-5
    Average 90 stars, based on 1 article reviews
    matlab ode15s solver - by Bioz Stars, 2026-10
    90/100 stars

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    Concentration Assay:

    Article Title: Predicting seizure liability of small molecules using an in vitro multi-electrode array based assay coupled with modeling of brain disposition
    Article Snippet: .. The system of ODEs was solved in MATLAB® using the ODE15S solver. dAGI dt = − ka⋅AGI (1) dCp dt = ka AGI V − CL V Cp − P V ⋅ ( Cp⋅fu,p − CBBB ) + Pact V CBBB − P V ⋅ ( Cp⋅fu,p − CBCSFB ) (2) dCBBB dt = ( SABBB VBBB )⋅(P⋅ ( Cp⋅fu,p − CBBB ) − P⋅(CBBB − CECF) − Pact ⋅CBBB) (3) dCECF dt = 1 VECF ⋅(P⋅SABBB⋅(CBBB − CECF) − P⋅SAECF⋅ ( CECF − CICF⋅fu,b ) − QECF⋅CECF) (4) dCICF dt = SAICF VICF ⋅P⋅(CECF − CICF⋅fu,b) (5) dCCSF dt = SACSF VCSF ⋅(P⋅(CBCSFB − CCSF)+QECF⋅CECF − QCSF⋅CCSF (6) dCBCSFB dt = SABCSFB VBCSFB ⋅(P⋅ ( Cp⋅fu,p − CBCSFB ) − P⋅(CBCSFB − CCSF) (7) Where ka is the oral absorption rate constant (1/h), AGI is the amount of drug dosed to the GI, Cx is the concentration of drug in each compartment ‘x’, SAx is the surface area of each compartment ‘x’, Vx is the volume of each compartment ‘x,’ P is the passive permeability, Pact is the active permeability defined by the relationship ‘.Pact = P⋅ERʹ, ER is the efflux ratio, fu is the fraction unbound in plasma (p) or brain (b), QCSF is the CSF flow rate, and QECF is the ECF flow rate. .. The system of ODEs was solved in MATLAB using the ODE15S solver.

    Article Title: A Tool for On-Line Monitoring Microalgal Bioprocesses Based on Gas Balance Analysis.
    Article Snippet: .. Simulations were carried out using MATLAB ODE15s solver (version R2018), incorporating dilution and concentration factors for each chemical species at each reset. ..

    Permeability:

    Article Title: Predicting seizure liability of small molecules using an in vitro multi-electrode array based assay coupled with modeling of brain disposition
    Article Snippet: .. The system of ODEs was solved in MATLAB® using the ODE15S solver. dAGI dt = − ka⋅AGI (1) dCp dt = ka AGI V − CL V Cp − P V ⋅ ( Cp⋅fu,p − CBBB ) + Pact V CBBB − P V ⋅ ( Cp⋅fu,p − CBCSFB ) (2) dCBBB dt = ( SABBB VBBB )⋅(P⋅ ( Cp⋅fu,p − CBBB ) − P⋅(CBBB − CECF) − Pact ⋅CBBB) (3) dCECF dt = 1 VECF ⋅(P⋅SABBB⋅(CBBB − CECF) − P⋅SAECF⋅ ( CECF − CICF⋅fu,b ) − QECF⋅CECF) (4) dCICF dt = SAICF VICF ⋅P⋅(CECF − CICF⋅fu,b) (5) dCCSF dt = SACSF VCSF ⋅(P⋅(CBCSFB − CCSF)+QECF⋅CECF − QCSF⋅CCSF (6) dCBCSFB dt = SABCSFB VBCSFB ⋅(P⋅ ( Cp⋅fu,p − CBCSFB ) − P⋅(CBCSFB − CCSF) (7) Where ka is the oral absorption rate constant (1/h), AGI is the amount of drug dosed to the GI, Cx is the concentration of drug in each compartment ‘x’, SAx is the surface area of each compartment ‘x’, Vx is the volume of each compartment ‘x,’ P is the passive permeability, Pact is the active permeability defined by the relationship ‘.Pact = P⋅ERʹ, ER is the efflux ratio, fu is the fraction unbound in plasma (p) or brain (b), QCSF is the CSF flow rate, and QECF is the ECF flow rate. .. The system of ODEs was solved in MATLAB using the ODE15S solver.

    Clinical Proteomics:

    Article Title: Predicting seizure liability of small molecules using an in vitro multi-electrode array based assay coupled with modeling of brain disposition
    Article Snippet: .. The system of ODEs was solved in MATLAB® using the ODE15S solver. dAGI dt = − ka⋅AGI (1) dCp dt = ka AGI V − CL V Cp − P V ⋅ ( Cp⋅fu,p − CBBB ) + Pact V CBBB − P V ⋅ ( Cp⋅fu,p − CBCSFB ) (2) dCBBB dt = ( SABBB VBBB )⋅(P⋅ ( Cp⋅fu,p − CBBB ) − P⋅(CBBB − CECF) − Pact ⋅CBBB) (3) dCECF dt = 1 VECF ⋅(P⋅SABBB⋅(CBBB − CECF) − P⋅SAECF⋅ ( CECF − CICF⋅fu,b ) − QECF⋅CECF) (4) dCICF dt = SAICF VICF ⋅P⋅(CECF − CICF⋅fu,b) (5) dCCSF dt = SACSF VCSF ⋅(P⋅(CBCSFB − CCSF)+QECF⋅CECF − QCSF⋅CCSF (6) dCBCSFB dt = SABCSFB VBCSFB ⋅(P⋅ ( Cp⋅fu,p − CBCSFB ) − P⋅(CBCSFB − CCSF) (7) Where ka is the oral absorption rate constant (1/h), AGI is the amount of drug dosed to the GI, Cx is the concentration of drug in each compartment ‘x’, SAx is the surface area of each compartment ‘x’, Vx is the volume of each compartment ‘x,’ P is the passive permeability, Pact is the active permeability defined by the relationship ‘.Pact = P⋅ERʹ, ER is the efflux ratio, fu is the fraction unbound in plasma (p) or brain (b), QCSF is the CSF flow rate, and QECF is the ECF flow rate. .. The system of ODEs was solved in MATLAB using the ODE15S solver.

    other:

    Article Title: Subtle alteration in transcriptional memory governs the lineage-level cell cycle duration heterogeneities of mammalian cells
    Article Snippet: These differential equations are solved in MATLAB ode solver (ode15s).

    Article Title: Supplementary Text: Kinetic Modelling of β-cell metabolism reveals control points in the insulin-regulating pyruvate cycling pathways
    Article Snippet: With these settings, the output agreed with the MATLAB® ode15s solver.

    Article Title: Evaluation of Thiobacillus denitrificans ’ sustainability in nitrate-reducing Fe(II) oxidation and the potential significance of Fe(II) as a growth-supporting reductant
    Article Snippet: The system was solved in MATLAB using the ODE solver ode15s (Shampine and Reichelt ).

    Article Title: <i>In silico</i> modelling of multi‐electrode arrays for enhancing cardiac drug testing on hiPSC‐CM heterogeneous tissues
    Article Snippet: In the different setups presented in the Results, the simulations for updating the initial conditions of the ionic models (see Fig. 3) were performed by solving systems of ODEs using the Matlab built-in solver ode15s, which is designed for stiff systems (Shampine & Reichelt, 1997).



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